Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MILVIDVGNTNCTVGVYEKQKLLKHWRMTTDRHRTSDELGMTVLNFFSYANLTPSDIQGIIISSVVPPIMHAMETMCVRYFNIRPLIVGPGIKTGLNLKVDNPREIGSDRIVNAVAASEEYGTPVIVVDFGTATTFCYIDESGVYQGGAIAPGIMISTEALYNRAAKLPRVDIAESSQIIGKSTVSSMQAGIFYGFVGQCEGIIAEMKKQSNASPVVVATGGLARMITEKSSAVDILDPFLTLKGLELLYRRNKPTTEK
2GTD Chain:A ((1-248))
MDPMYLLVDVGNTHSVFSITEDGKTFRRWRLSTGVFQTEDELFSHLHPLL---GDAMREIKGIGVASVVPTQNTVIERFSQKYFHISPIWVKAK-NGCVKWNVKNPSEVGADRVANVVAFVKEYGKNGIIIDMGTATTVDLVVN-GSYEGGAILPGFFMMVHSLFRGTAKLPLVEVKPADFVVGKDTEENIRLGVVNGSVYALEGIIGRIKEVYGDLP-VVLTGGQSKIVKDMIKH-EIFDEDLTIKGVYHFCFG-------
General information:
TITO was launched using:
RESULT:
Template:
2GTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -181212 for 1996 contacts (-90.8/contact) +
2D Compatibility (PS) -26255 + (NN) -9239 + (LL) 884
1D Compatibility (HY) -20800 + (ID) 4300
Total energy: -240922.0 ( -120.70 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_2GTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GTD-query.scw
PDB file :
Tito_Scwrl_2GTD.pdb
: