Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNISDIIEAYLKQVLESSEAVEIKRSEIADKF----ECVPSQINYVINTRFTMERGYIVESKRGGGGYIRIIKVKMNDKLQLLEAIISMVHDKKVSQSFSEDVILRLLEEEVITKKEARLMVAALDREVLILPLPDRDILRSRILEAMLVALKYD
1OKR Chain:A ((13-120))
---------WEVMNIIWMKKY--ASANNIIEEIQMQKDWSPKTIRTLITR--LYKKGFIDRKK-DNKIF-QYYSLVEE-SDIKYKTSKNFIN--KVYKGGFNSLVLNFVEKEDLSQDEIEELRNIL------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1OKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44144 for 585 contacts (-75.5/contact) +
2D Compatibility (PS) -11105 + (NN) -4858 + (LL) 4424
1D Compatibility (HY) -5600 + (ID) 700
Total energy: -61983.0 ( -105.95 by residue)
QMean score : 0.292
(partial model without unconserved sides chains):
PDB file :
Tito_1OKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OKR-query.scw
PDB file :
Tito_Scwrl_1OKR.pdb
: