Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYELVFLAAGQGKRMNAQKNKMWLELVGEPIFIHALRPFLAD-NRCSKVIVVCQEEERKHVKELMSQLNVAEHRIEIVKGGSERQYSVAAGLERCG--TGRVVLVHDGARPFITLDIIDRLLIG-VEQSKAAICAVKVKDTVKRVMNGVVQETVDRENLWQVQTPQAFELPILRKAHQLARKEQFLGTDEASLVERIPCPVAIVQGSYYNIKLTTPEDMPLAKAILGELGGIAND
1VPA Chain:A ((13-231))
-MNVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEA-IDGVVIVTRREWFEVVEKRVFH----EKVLGIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRAR-ETGAATLALKNSDALVRVEN-DRIEYIPRKGVYRILTPQAFSYEILKKAHEN----GGEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREWE-----
General information:
TITO was launched using:
RESULT:
Template:
1VPA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153117 for 1767 contacts (-86.7/contact) +
2D Compatibility (PS) -23652 + (NN) -8294 + (LL) 1104
1D Compatibility (HY) -14400 + (ID) 3600
Total energy: -201959.0 ( -114.29 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_1VPA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VPA-query.scw
PDB file :
Tito_Scwrl_1VPA.pdb
: