Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQILLVDGYNVIGAWPELSYLKDRDLEAARDKLVEWMAEYQSYTGYRVVVVFDAQFVRGVK----RKS-KKYQVEVVFTH-------EDE-TADEYIEQKAIEWKNVRTQIMVATSDYTEQWAIFGQGALRISSRELLFEIQEMSKQIGKKIKRIQEEMPKSNLNLDSDVISQLEKWRRGEE
2QIP Chain:A ((11-126))
-KIAILVDVQNVYYTCREAYRS-NFDYN----QFWYVATQE---KEVVSAKAY-AIASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVE---------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2QIP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48289 for 672 contacts (-71.9/contact) +
2D Compatibility (PS) -11103 + (NN) -2380 + (LL) 5020
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -60402.0 ( -89.88 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_2QIP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QIP-query.scw
PDB file :
Tito_Scwrl_2QIP.pdb
: