Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIFPSMGTLETTANLLAGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGDETL--VRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
5BNK Chain:B ((35-244))
----------------------------------SKLDVVVFPVSVHYDHTRKLLQ-SKFSTGIQNVSKFG------EVSAEIAKDLNIEYVIIGHFERRK-FHETDEDVREKLQASLKNNLKAVVCFGESLEQR-QNKTIEVITKQVKAFVDLID--NFDNVILVYEPLW---TGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDII--------
General information:
TITO was launched using:
RESULT:
Template:
5BNK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105766 for 1507 contacts (-70.2/contact) +
2D Compatibility (PS) -21393 + (NN) -11175 + (LL) 2704
1D Compatibility (HY) -16000 + (ID) 3550
Total energy: -155180.0 ( -102.97 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_5BNK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BNK-query.scw
PDB file :
Tito_Scwrl_5BNK.pdb
: