Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNRIGFIGAGNMGTAMIRGLAQANLVKREEIIVGGRNLEKLKPLEAEFTGLQITTDTEKLVEQADIIILAVKPYTIPEILTSVKEKLTPDKIIISVAAGVTIQDLEELTSAKTKIVRVMPNTPALVGEAMSSVSPNTNVTSEELKEVTAIFTSFGEAEVVSENLMDAVIGVSGSSPAYVYMFIEALADGAVLSGMPRDKAYKFAAQAVLGAAKTVLETGEHPGKLKDMVTSPGGTTIEAVKSLENDGFRSAVINAVQAAAKKNSSM |
2AMF Chain:C ((5-259)) | --KIGIIGVGKMASAIIKGLKQTP----HELIISGSSLERSKEI-AEQLALPYAMSHQDLIDQVDLVILGIKP----QLFETVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLMELERLGLTATVSSAIDKTIDKAKSL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2AMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -108996 for 1854 contacts (-58.8/contact) +
2D Compatibility (PS) -27676 + (NN) -9261 + (LL) 972
1D Compatibility (HY) -22000 + (ID) 4500
Total energy: -171461.0 ( -92.48 by residue)
QMean score : 0.470
|
|
|