Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVP-NDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLF--FPKSLNVFHWHQDTF-ALPTGSTRLFASEGCLNQAFLYG-ENIIGLQFHFEMEK-----AGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
2YWB Chain:A ((1-213))
-MVLVLDFGSQ-YTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDP-DAPR------PDPRLFSSGLPLLGICYGMQLLAQELGGRVERA---EYGKALLTRH-EGPLFRGLEGEVQVWMSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELA------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2YWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145831 for 1459 contacts (-100.0/contact) +
2D Compatibility (PS) -18253 + (NN) -971 + (LL) 4404
1D Compatibility (HY) -6000 + (ID) 2300
Total energy: -168951.0 ( -115.80 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_2YWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWB-query.scw
PDB file :
Tito_Scwrl_2YWB.pdb
: