Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVIIDYDTGNTKSISKALDFIGLQNKISS--D-ATE--ISQADGVILPGVGAYPEAMKELTRRGLNKTLKEIAAGGKPILGVCLGMQLLLESSNEHSFTNGLGLIPGHVEKLPEDPEFAVPHMGWNQLQIKRATPLTKQL-DGEYVYYVHSYYANC--PEEYIIATSGYSIEVPGMIN-KGNIYGAQFHPEKSGQI-GLEILKGFKEVTYSCKSSQQ
2VPI Chain:A ((27-214))
AVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISG------------APWFDPA---IFTIGKPVLGICYGMQMMNKVFGGTV------------HKK------SVREDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVVARSGN--IVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCS----
General information:
TITO was launched using:
RESULT:
Template:
2VPI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65286 for 1402 contacts (-46.6/contact) +
2D Compatibility (PS) -18190 + (NN) -5476 + (LL) 1896
1D Compatibility (HY) -10000 + (ID) 2400
Total energy: -99456.0 ( -70.94 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_2VPI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VPI-query.scw
PDB file :
Tito_Scwrl_2VPI.pdb
: