Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEYFLSLLKI-------IVLLAVLAGISYFLVKKNKQANRTRKSENDLIKLKDTLLISHQLRAVLLEADGEKVLAIISNNDIRTVSLKGKNDQNEKLFRELLLKEETKENA
1GG3 Chain:A ((188-279))
---GVDLHKAKDLEGVDIILGVCSSGLLVYK-------D---KLRINRFPWPKVLKISYKRSSFFIKIRPGE-----QEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR-
General information:
TITO was launched using:
RESULT:
Template:
1GG3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19818 for 557 contacts (-35.6/contact) +
2D Compatibility (PS) -9324 + (NN) -2397 + (LL) 2288
1D Compatibility (HY) -4400 + (ID) 650
Total energy: -34301.0 ( -61.58 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_1GG3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GG3-query.scw
PDB file :
Tito_Scwrl_1GG3.pdb
: