Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVGINTDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTANAFM-YKAMMKVFENLTENEIEELIRLNKKVETLLKKSK
1JGS Chain:A ((3-137))
--------NEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLP--NPNDKRGVLVKLTTGGAAICEQCHQL--VGQDLHQELTKNLTADEVATLEYLLKKVL-------
General information:
TITO was launched using:
RESULT:
Template:
1JGS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51714 for 816 contacts (-63.4/contact) +
2D Compatibility (PS) -14232 + (NN) -4859 + (LL) 1340
1D Compatibility (HY) -6000 + (ID) 1500
Total energy: -76965.0 ( -94.32 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_1JGS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JGS-query.scw
PDB file :
Tito_Scwrl_1JGS.pdb
: