Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKMMVMGSVGCGKTTLCQKLHGYDIL--YKKTQA-------VE-----YFQEMIDTPGEFVQHRQLYSALTVTAADASVIAILQSVTEKKQTFS-PMFAS----------IFAKPVIGIVTKVDLAESDKDIERAERELRMAGAKHIFYISSVEETGIEELRAYLED
1VG8 Chain:A ((9-170))
-LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ----ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA-
General information:
TITO was launched using:
RESULT:
Template:
1VG8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41072 for 1012 contacts (-40.6/contact) +
2D Compatibility (PS) -14854 + (NN) -520 + (LL) 588
1D Compatibility (HY) -4800 + (ID) 1400
Total energy: -62058.0 ( -61.32 by residue)
QMean score : 0.337
(partial model without unconserved sides chains):
PDB file :
Tito_1VG8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VG8-query.scw
PDB file :
Tito_Scwrl_1VG8.pdb
: