Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---VATKKKTFEEA-----IAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVVTDAGEEIPFEADGE-------------
3D8L Chain:A ((1-91))
GAKQLSTARKFKMITGKDLFQQQKAMDTELKKEDGEITDLMEFVQYGLYLALF-QDNIVKAKSDFSDFRSS----FEFDTDGKGLKELVELWQKEI
General information:
TITO was launched using:
RESULT:
Template:
3D8L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11777 for 412 contacts (28.6/contact) +
2D Compatibility (PS) -7795 + (NN) -5498 + (LL) 236
1D Compatibility (HY) -4800 + (ID) 600
Total energy: -6680.0 ( -16.21 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_3D8L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D8L-query.scw
PDB file :
Tito_Scwrl_3D8L.pdb
: