Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKENNFISLAKQAREFAYVPYSKFPVGAALVTKDDEVVLGCNIENASFGLTNCAERTAIFKAVSEGKRDFKQLVVVADTDGP-VSPCGACRQVISEFCAPDMPVILTNLTGKTATVTVKELLPGAFTSEDML
2FR5 Chain:D ((22-142))
---------SREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISSDLQEEFISPCGACRQVMREF-GTDWAVYMTKPDGTFVVRTVQELLPASFGPEDL-
General information:
TITO was launched using:
RESULT:
Template:
2FR5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60204 for 911 contacts (-66.1/contact) +
2D Compatibility (PS) -13454 + (NN) -5436 + (LL) 932
1D Compatibility (HY) -10800 + (ID) 3100
Total energy: -92062.0 ( -101.06 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_2FR5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FR5-query.scw
PDB file :
Tito_Scwrl_2FR5.pdb
: