Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKIAFVFPGQGAQKVGMGQDVAAEYPEAKKIYDDADERLGFSITEIITEGPIELLTKSENAQPALVSTSVA----ILRALETYGVKADYVAGHSLGEYSALVAGGFLEASDAIYLVRKRGELMEAAVP-NGAGAMAAVLGVDRETLKTITEEVTKEGDAVQLANLNCPGQIVISGTTAGVEKAGEKAKESGAKRVLPLAVSGPFHSSLMEPAALAFRDVLAEVKISDGQIPVVNNVDAKETTDKSEISDKLIKQIYSPVLWEDIVEELIKNGVDTFVEIGSGKVLAGLIKKINRDVTVLSAGDAESVKSVAATLKGE |
2QC3 Chain:A ((1-302)) | -HMIALLAPGQGSQTEGMLSPWLQ-LPGAADQIAAWSKAADLDLARLGTTASTEEITDTAVAQPLIVAATLLAHQELARRCVLAG-KDVIVAGHSVGEIAAYAIAGVIAADDAVALAATRGAEMAKACATE-PTGMSAVLGGDETEVLSRLEQ-----LDLVPANRNAAGQIVAAGRLTALEKLAEDPPA-KA-RVRALGVAGAFHTEFMAPALDGFAAAAANIATADPTATLLSNRDGKPVTSAAAAMDTLVSQLTQPVRWDLCTATLREHTVTAIVEFPPAGTLSGIAKRELRGVPARAVKSPADLDELAN----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2QC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145626 for 2723 contacts (-53.5/contact) +
2D Compatibility (PS) -32319 + (NN) -13831 + (LL) 832
1D Compatibility (HY) -10000 + (ID) 4500
Total energy: -205444.0 ( -75.45 by residue)
QMean score : 0.537
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