Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VTFERLGTMNVNAEGHLEIGGVDTLKLADKYGTPLYVYDVALIRDRARGFKKTFEELGVKAQVAYASKAFSAVAIYQLMAEEGLSLDVVSGGELFTAIKANFPPERIHFHGNNKSAEEIHMALDYGIGCFVIDNYYEISLLEDILIERNEKASVLIRVTPGIEAHTHDYILTGQDDSKFGFGLTNGQAEKAIKQVLHASASFDLIGLHCHIGSQIFETTGFKLAARRIMDKLVEWHQTLGFDSKVLNLGGGFGVRYTAEDEPLEPSEYVRQIMDEVRDVAESNDIDIPEIWIEPGRSLVGEAGTTLYKVGSRKEVPGIRNYIAVDGGMSDNIRPALYDAHYDAVLAANPEKVAEETVAIAGKCCESGDMLIWDLPLPKSNAGEVLAVFCTGAYGYAMASNYNRIPRPPVVFVEN-GVDKLIVARETYENLVQNDLSL |
| 2YXX Chain:A ((4-385)) | -----------------------LRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEG--VNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVRIVNVDSFEEMEIWRELNP---EGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLE--DLDSFMER----FRSMNIRGLHVHIGSQITRVEPFVEAFSKVVRASERY------GFEEINIGGGWGINYSG--EELDLSSYREKVVPDLK--------RFKRVIVEIGRYIVAPSGYLLLRVVLVKRR-HNKAFVVVDGGMNVLIRPALYSAYHRIFVLGK--QGKEMRADVVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVV-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YXX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -246488 for 3248 contacts (-75.9/contact) +
2D Compatibility (PS) -40489 + (NN) -11225 + (LL) 2420
1D Compatibility (HY) -26000 + (ID) 6300
Total energy: -328082.0 ( -101.01 by residue)
QMean score : 0.531
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