Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYLKETLDQFASIDNILKLLKK--NPSFNKHCIQERLPQKTIITS-NKQRKHIYIIEEGFMKLIFDDNKPRDFSYILSKGAFPFLPVYIEDIPEHTMMVALTDIVWWKIDIGFFKSMMEIEDPRNYLMLHQLAETRRRFYT-IAYQEKLTSRESIYYSLSTL-IEFGLRISEKVVELPEFLTYQILADHANTSKSYTSKVLGHLREDGILESQ-KKPWRINDVQKLQKLIEMNVPLVKIQKKLRADLHS
2FMY Chain:A ((5-218))
---------RLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT-------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLRLAEFLVQAAMDTGLKVP-QGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLLKDLQKLKEFSS------------------
General information:
TITO was launched using:
RESULT:
Template:
2FMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108431 for 1494 contacts (-72.6/contact) +
2D Compatibility (PS) -22425 + (NN) -3749 + (LL) 3200
1D Compatibility (HY) -11200 + (ID) 2000
Total energy: -144605.0 ( -96.79 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_2FMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FMY-query.scw
PDB file :
Tito_Scwrl_2FMY.pdb
: