Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIIGIAACTSGIAHTYIAKEKLTKAGLALGHNVHIETQGTIGIEDELSAEQVKNADVVIIAADIKISGKDRFKGKRVVEIPTDLAIKAPKQIINKIDKEINN
1TVM Chain:A ((22-112))
--RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETY-----MDGVHLICTTARVDR----SFGDIPLVHGMPFVSGVGIEALQNKILTILQ-
General information:
TITO was launched using:
RESULT:
Template:
1TVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37225 for 584 contacts (-63.7/contact) +
2D Compatibility (PS) -9474 + (NN) -936 + (LL) 352
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -51633.0 ( -88.41 by residue)
QMean score : 0.380
(partial model without unconserved sides chains):
PDB file :
Tito_1TVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TVM-query.scw
PDB file :
Tito_Scwrl_1TVM.pdb
: