Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFTKKRGLMLLAAVLLTVCAIWEYAMPTDAAVKSYYVKVEDAGKPVQKNQFKGFKYVSNVYDDKGKQKQLTFYSEKE-----LTKNEQFKVLVGENK---------MVVNYKKI--KNVPDKIKYLAEK---
2K5W Chain:A ((1-111))
---------------------MERASLNRIGKDVYYMQIKGEGTIEKVDGRNLRNYTLPAYDEDGVKKQITFRSTKKENDHKLNKYAFLRLYVDQDDNSKNEISSIEVKSYEEIQKADLPEKVKDKFTIKLE
General information:
TITO was launched using:
RESULT:
Template:
2K5W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10323 for 501 contacts (-20.6/contact) +
2D Compatibility (PS) -9791 + (NN) 1242 + (LL) 2664
1D Compatibility (HY) -2400 + (ID) 1200
Total energy: -19808.0 ( -39.54 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_2K5W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K5W-query.scw
PDB file :
Tito_Scwrl_2K5W.pdb
: