Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKMAVISLVLLLFLVGCGKEEAAQKPEQKTDKEPKIVATTVAITEIMDKLDL--PLVGIPSSSK-KLPKRY--ADVKETGSPMGPDLEIIRMLKPDMVLSTKTLEADLKSGFEGADLEADFLDF---TSIASMQTEIKNLGAKFDRIEEATKLNKDLTSDIDQVKSNVAKKK-KPTVLILMGVPGSYLVVTEHAYIGDLVKLAGGENVIKDQ--KVEYLASNTEYLQSANPDIILRAAHGMPAEVVKMFDEEFKTNDIWKHFDAVKNNRVYDLDENLFG-MTASLN-APEALKEMEKMLYDN |
| 3GFV Chain:A ((27-298)) | --------------------------GTKVPKNPKKVVVFDFGSLDTLDKLGLDDIVAGLPKQVLPKYLSKFKDDKYADVGSLKEPDFDKVAELDPDLIIISARQ-SESYKEFSKIA-PTIYLGVDTAKYMESFKSDAETIGKIFDKEDKVKDELANIDHSIADVKKTAEKLNKNGLV--IMANDGKISAFGPKSRYGLIHDVFGVAPADQNIKASTHGQSVSYEYISKTNPDYLFVIDRGTAIGE-TSSTKQVVENDYVKNVNAVKNGHVIYLDSATWYLSGGGLESMTQMIKEVKDGLEKE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GFV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -73560 for 2151 contacts (-34.2/contact) +
2D Compatibility (PS) -28053 + (NN) -13249 + (LL) 3796
1D Compatibility (HY) -9600 + (ID) 2550
Total energy: -123216.0 ( -57.28 by residue)
QMean score : 0.522
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