Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -LKVDSLSKKIDGK----LLLDKITFEVKPGEIIGIVGRNGVGKTTLFRTIMGFYIPDAGDVYLD-EPLSKNHQLKQKLFMLQDNLNCWDGYKIPTIKKFYQKTYPLFDGDKFDNLMKQVNLAKDVK---FQNYSKGMKGLFGLVLALSIGAEFILLDEPMEGLDIIAQKKIMGILLEEVEKRKLGIIISSHRLADLDPIAD-YIHILQDNHIEESYHLESLREQAVKIQIAFENKKIPHFLLENGKVINKYGRVYTILFRDMN-TELYAAIKKEKPIFMDELAVTLEDLFIYHLEEQGGEKL |
| 2PJZ Chain:A ((1-261)) | MIQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYE--IGVTVNDIVYLYEELKGL-DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVD----AARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGER--NDALLVLDIMDKKVSIVKGDLGMKFGALGSLNRIYGII------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PJZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -166484 for 2007 contacts (-83.0/contact) +
2D Compatibility (PS) -26001 + (NN) -2207 + (LL) 4168
1D Compatibility (HY) -16800 + (ID) 3000
Total energy: -210324.0 ( -104.80 by residue)
QMean score : 0.416
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