Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VIRFFKIVTPILLSISLVACSSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEKT--SHEELAKKLTQVE---------------KNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYGDFGYEDAISSDEFSLSYLAAP-SSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGAMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALS--------VFPHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP |
| 3T1I Chain:A ((28-312)) | ----------------------------------DDENTFKILVATDIHLGFMEKD--------------AVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQLNISIPVFSIHGNHDDPTGADA-LC-----ALDILSCAGFVNHFGRSM---SVEK-IDISPVLLQKGSTKIALYGLGSIPDER--------LYRMFVNKKVTMLRPKED---ENSWFNLFVIHQNRSKHGS---T-------NFIPEQFLDDFIDLVIWGHEHECKIAPTKN-EQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGR-------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3T1I.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -49185 for 1976 contacts (-24.9/contact) +
2D Compatibility (PS) -25541 + (NN) -5887 + (LL) 10296
1D Compatibility (HY) -9200 + (ID) 1900
Total energy: -81417.0 ( -41.20 by residue)
QMean score : 0.338
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