Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRKGPVAKRDVLPDPIYNSKLVTRLINKMMVDGKRGKSQAILYSAFDIIAQETGKDPMEVFEQAMKNIMPLLEVKARRVGGANYQVPIEVRADRRSTLGLRWLVNYARLRGEKTMEVRVAREIMDAANNTGASVKKREDTHKMADANRAFAHYRW
2HHH Chain:G ((2-156))
-ARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW
General information:
TITO was launched using:
RESULT:
Template:
2HHH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37828 for 1139 contacts (-33.2/contact) +
2D Compatibility (PS) -16986 + (NN) -8435 + (LL) 208
1D Compatibility (HY) -13200 + (ID) 3950
Total energy: -80191.0 ( -70.40 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_2HHH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HHH-query.scw
PDB file :
Tito_Scwrl_2HHH.pdb
: