Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVQFLKKGMVWVQSDIEKQEDLFQMVAESGKSEGYV-TDDFLTRLTDREQTFPTGLKLDGYGVALPHTD----PECVTEQFIAVITVKDGIPFKLMEDAGQTVEANLIFVLGLNEPHSQLAVLQQLMGTIQDKDNVAALLRAKDEDEVKQILETIAV
1A3A Chain:A ((4-148))
---LFKLGAENIFLGRKAATKEEAIRFAGEQLVKGGYVEP-EYVQAMLDREKLTPTYL---GESIAVPHG-TVEAKDRVLKTGVVFCQYPEGVRF--GEEEDDIARLVIGIAARNN---EHIQVITSLTNALDDESVIERLAHTTSVDEVLELLAGRK-
General information:
TITO was launched using:
RESULT:
Template:
1A3A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93870 for 1112 contacts (-84.4/contact) +
2D Compatibility (PS) -15001 + (NN) -5196 + (LL) 760
1D Compatibility (HY) -6400 + (ID) 1450
Total energy: -121157.0 ( -108.95 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_1A3A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A3A-query.scw
PDB file :
Tito_Scwrl_1A3A.pdb
: