Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVSKVAIASDHGGIELRKSIISYLESVGISYEEFGPETPESVDYPRLAITVSEKVVNQEVDRGILVCGTGIGMSIAANKVKGIRCALVGDTFSAHATREHNDTNVLALGARVIGPGLAEDIVKIWLETEYEGGRHANRVGQITAYEDSHA
4LFN Chain:D ((3-129))
-----IAIGNDHIVTMQKIEISNMLKDMGYTVIDEGTYDTHRTHYPIYGKKVAEDVADGRADLGIVMCGTGIGISTAADKNEGIRAAMCDDVTSAVYAREQLNANVLGIGGAVVGVHLIQDIVKAYLDATYK-------------------
General information:
TITO was launched using:
RESULT:
Template:
4LFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105471 for 1119 contacts (-94.3/contact) +
2D Compatibility (PS) -13684 + (NN) -6260 + (LL) 1272
1D Compatibility (HY) -7600 + (ID) 2400
Total energy: -134143.0 ( -119.88 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_4LFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LFN-query.scw
PDB file :
Tito_Scwrl_4LFN.pdb
: