Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VEMDPNTDLSSVTRPRATPVLTTFQFDSGKVGHIWTTFSEDQIDLNFACP--EVLYKMID----VLMFYLE--EGAEYVRLDAVGFMWKVPGTSSIHLEETHEIVKLFRDLVDIAAPGTIIITETNVPHVDNISYFGNGEKEAHMVYQFPL-PPLVLHAIHHG---------NAKFLRNWAKNLEL--P-EGKRTFFNFLASHDGIGLNPVRGIIPEAEILALVNDLEEEGALVSYKQNPDGSKSPYEINVTYMDALSKQADTDDLRLARFLVAHAVLMSIPGVPAVYVQSILGSRNDYLGVEATSHNRSINRKKYDLAEITAELEQRGSLRKATYDALTKLISTRKAESLFHPEIPMEVLES--TAELFVVKRSSDAESIILIHNLSEKEVSYSLDS--------GVYTNLYKGSTV---TGSDSIKLSGYEFCWLKTKNYREEQK |
| 1JI1 Chain:A ((291-636)) | ----------------SSPWYNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDANGNN--GSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGNAN---PWTAQ-GNQWDAATNFDGFTQPVSEWITGKDYQNNSASISTTQFDSWLRGTRANYPTNVQQSMMNFLSNHDIT---------------RFATRSGG-------------------------------------DLWKTYLALIFQMTYVGTPTIYYGDEYGMQGGADP---------DNRRSFDWSQATP--------SNSAVALTQKLITIRNQYPALRTG-SFMTLITDDTNKIYSYGRFDNVNRIAVVLNNDSVSHTVNVPVWQLSMPNGSTVTDKITGHSYTVQNGMVTVAVDGHYGAVLA--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JI1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -186809 for 2420 contacts (-77.2/contact) +
2D Compatibility (PS) -33089 + (NN) -14529 + (LL) 4736
1D Compatibility (HY) -4000 + (ID) 2750
Total energy: -236441.0 ( -97.70 by residue)
QMean score : 0.451
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