Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVADNRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNNQY--DSMFQTQVDTISGM------H--------W-DMKKRQISPQAAGKMMEAIYYQN-------GDIVNYLSKTDFDNTRIPKNIP--VKVAHKIGDAY-DYKHDAAIVYA--EQPFIMIIFTDKSS--------YDDITKIADDVYQVLK |
| 3NY4 Chain:A ((4-264)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DRFAELERR--YDARLGVYVPATGTTAAIEYRADERFAFCSTFAAPLVAAVLHQN--PLTHLDKLITYTSDDI-------RSISPVAQQH-VQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRS-LGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NY4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -82897 for 1896 contacts (-43.7/contact) +
2D Compatibility (PS) -24029 + (NN) -8076 + (LL) 14384
1D Compatibility (HY) -5200 + (ID) 2100
Total energy: -107918.0 ( -56.92 by residue)
QMean score : 0.420
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