Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYDHLLNLTHYKDINPNLDLAIDYLLSHDLRNLDIGTYHISPEVILMVQSNQLSESFDHIFEYHKKYLDIHYVIEGHEVIKLG--KGDKVEVEEYL--GDIGFIK-CSEETSFDLRDNYIAFFFPEEAHQPNGMGSLGNYVKKGVLKVLMA--
1JOP Chain:A ((1-155))
MIISSLTNPNFKVGLPKVIAEVCDYLNTLDLNALENGRHDINDQIYMNVMEPK--------AELHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPKMFAVFYPYEPHKPCC------VIKKLVVKVPVKLI
General information:
TITO was launched using:
RESULT:
Template:
1JOP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80456 for 954 contacts (-84.3/contact) +
2D Compatibility (PS) -14073 + (NN) -160 + (LL) 460
1D Compatibility (HY) -12400 + (ID) 1850
Total energy: -108479.0 ( -113.71 by residue)
QMean score : 0.318
(partial model without unconserved sides chains):
PDB file :
Tito_1JOP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JOP-query.scw
PDB file :
Tito_Scwrl_1JOP.pdb
: