Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKDLQKYQGIIPAFYACYDDKGDICPERVKALTNYFIDKGVQGLYVNGSSGECIYQSVADRKLVLENVMSVAKGKLTVIAHVACNNTKDSVELAMHAEAIGVDAIAAIPPIYFRLPEYAIADYWNTISQAAPQTDFIIYNIPQLAGVALTSDLYRKMLQNPQVIGVKNSSMPVQDIQNFVAIGGENH--IVFNGPDEQFLGGRLMGAAAGIGGTYGVMPELYLTLNQLIVDKDLEKARELQFTINDIITKLCSGHGNMYAVIKSVLEINEQLTIGSVRLPLASVTEEDKPIIKEAAEMIRHAKKQFC |
3LBM Chain:B ((28-318)) | -------RGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTS---GDLYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVIDLLIK--TGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQER---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3LBM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -205287 for 2564 contacts (-80.1/contact) +
2D Compatibility (PS) -31128 + (NN) -14308 + (LL) 1152
1D Compatibility (HY) -23200 + (ID) 4700
Total energy: -277471.0 ( -108.22 by residue)
QMean score : 0.599
|
|
|