Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRIGNKVITLPAGVEIINKDNVVTVKGPKG-ELTREF-NKNIGITVEGT-EVTVTRPNDSKEMKTIHGTTRANLNNMVVGVSEGFKKALEMRGVGYRAQLQGSKLVLSVGKSHQDEVEAPEGVTFEVPTPTTINVIGINKESVGQTAAYVRSLRSPEPYKGKGIRYVGEFVRRKEGKTGK
1RL6 Chain:A ((7-81))
-------PIEIPAGVTVTVNGNTVTVKGPK-GELTRTFH-PDMTITVEG-NVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIRYEGELVRL-------
General information:
TITO was launched using:
RESULT:
Template:
1RL6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34199 for 483 contacts (-70.8/contact) +
2D Compatibility (PS) -8213 + (NN) -5233 + (LL) 988
1D Compatibility (HY) -5200 + (ID) 2150
Total energy: -54007.0 ( -111.82 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_1RL6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RL6-query.scw
PDB file :
Tito_Scwrl_1RL6.pdb
: