Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIHGAGRTDAGVHAYGQ----VIHFDLPQ-----ARDVEKLRFGLDTQCPDDIDIVKVEQVS----DDFHCRYDKHIKTYEFLVDIGRPKNPMMRNYATHYPYPVIIELMQEAIKDLVGTHDFTGFTASGTSVENKVRTIFDAKIQFEASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAAGNGLYLKEIIYEDKECFSNFRK |
2V9K Chain:A ((1-529)) | GMFPLTEENKHVAQLLLNTGTCPRCIFRFCGVDFHAPYKLPYKELLNELQKFLETNVCNVCLGILQEFCEKDFIKKVCQKVEASGFEFTSLVFSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRDDIVQLKEAYKWITHPLFSEELGVPIDGKSLFEVSVVFAHPETVEDCHFLAAICPDCFTRMAVMKALNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLES--SVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNS-SNKIQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWT---NKAIQKKDIEFLNDIKDLKIDQKTPLRVLHRR----------PLAVRARVIHFMETQYVDEH-HFRLHLKTQAGTY------IKEFVHGDFGRTKPN---------IGSLMNVTADILELDVESVDVD----WPPALD |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V9K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -59512 for 1581 contacts (-37.6/contact) +
2D Compatibility (PS) -23646 + (NN) -7097 + (LL) 1936
1D Compatibility (HY) -6000 + (ID) 1550
Total energy: -95869.0 ( -60.64 by residue)
QMean score : 0.229
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