Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MELEVFAGQEKSELSMIEVARAILEQRGRDNEMYFSDLVNDIQTYLGKSDSAIRESLPFFYSDLNTDGSFIPLGENKWGLRSWYAIDEIDEEIITLEEDEDGAPKRKKKRVNAFMDGDEDAIDYNDDDPEDEDFTEETPSLEYDEENPDDEKSEVESYDSEINEIIPDEDLDEDVEINEEDDEEEEEEEEV |
2LNB Chain:A ((24-79)) | -------------------ILQVLTEAGS--PVKLAQLVKEC----QAPKRELNQVLYR----MKKELKVSLTSPATWCLGGTDPE--------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LNB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -23250 for 359 contacts (-64.8/contact) +
2D Compatibility (PS) -5899 + (NN) -1047 + (LL) 7332
1D Compatibility (HY) -2800 + (ID) 350
Total energy: -26014.0 ( -72.46 by residue)
QMean score : 0.366
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