Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKKKSVFTCQECGYQSPKYLGRCPNCSAWSSFVEEVEVQEVKNARVSLNGEKSRPTKLKDVSSINYSRTKTDMDEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRSEIEKIKPDFLIIDSIQTIMSPEVSSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTV-FGNAKRTTTGLDFN--R--VSLIMAVLEKRC-------GLLLQNQDAYLKSA-GGVKLDEPAIDLAVAVAIASSYKEKPTNPQESFIGEIGLTGEIRRVTRIEQRINEASKLGFTKIYAPKNSLAGIE-----IPKGIDVIGVTTVSQVLKAVFST |
2X36 Chain:A ((758-948)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DVTPPGVVMGLAWTAMGGSTLFVETSLRRPQD---GSLEVTGQLGEVMKESARIAYTFARAFLMQHAPANDY-LVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMGRPVRQNLAMTGEVSLTGKILPVGGIKEKTIAAKRAGVTCIVLPAENKKDFYDLAAFITEGLEVHFVEHYREIFDIAFP- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2X36.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89772 for 1396 contacts (-64.3/contact) +
2D Compatibility (PS) -18316 + (NN) -13233 + (LL) 19028
1D Compatibility (HY) -4000 + (ID) 1500
Total energy: -107793.0 ( -77.22 by residue)
QMean score : 0.433
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