Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTGILNSHLAKLADDLGHTDRVCIGDLGLPVPNGIPKIDLSLTSGIPSFQEVLDIYLENILVEKVILAEEIKEANPDQLSRLLAKLDNSVSIEYVSHDHLKQMTQDV--KAVIRTGENTPYSNIILQSGVII
3P13 Chain:C ((7-134))
----AVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
General information:
TITO was launched using:
RESULT:
Template:
3P13.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67508 for 952 contacts (-70.9/contact) +
2D Compatibility (PS) -13939 + (NN) -10655 + (LL) 388
1D Compatibility (HY) -10000 + (ID) 2650
Total energy: -104364.0 ( -109.63 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_3P13.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P13-query.scw
PDB file :
Tito_Scwrl_3P13.pdb
: