Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTLIVNSHPDFSNPYSFTTILQEKFIELYNEHFPNHQLSILNLYDCVLPEITKEVLLSIWSKQRKGLELTADEIVQAKISKDLLEQFKSHHRIVFVSPMHNYNVTARAKTYIDNIFIAGETFKYTENGSVGLMTDDYRLLMLESAGSIYSKGQYSPYEFPVHYLKAIFKDFMAFDDFCVVRAEGTDIL--DRQVVLDKMNQDLREAFEAFYSKE
3W77 Chain:A ((2-207))
-ATVLFVKANNRPAEQAVSVKLYEAFLANYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKG-FDLTEEEAKAVAVADKYLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIG-DKKIALLNARGGVYSEGPAAEVEMAVKYVASMMG-FFGATNMETVIIEGHNQFPDKAEEIIAAGLEEAAKVASKF----
General information:
TITO was launched using:
RESULT:
Template:
3W77.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118431 for 1578 contacts (-75.1/contact) +
2D Compatibility (PS) -22379 + (NN) -13898 + (LL) 144
1D Compatibility (HY) -12000 + (ID) 2600
Total energy: -169164.0 ( -107.20 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_3W77.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W77-query.scw
PDB file :
Tito_Scwrl_3W77.pdb
: