Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHIKEVSKKTGITSDTIRYYERINLIPPIHRSESGIREFTQNDIDILEFVRYFRGAGVSVESLIDYIHLVEKGDSTIPARLEILKDERDNLEDRLQGLQEALNRLNHKIDNYQNKVVPREQELFDPTTK
1R8D Chain:A ((3-107))
YQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDHPN------FDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLSVD----------------
General information:
TITO was launched using:
RESULT:
Template:
1R8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44713 for 625 contacts (-71.5/contact) +
2D Compatibility (PS) -11238 + (NN) -5667 + (LL) 1056
1D Compatibility (HY) -6800 + (ID) 950
Total energy: -68312.0 ( -109.30 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_1R8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R8D-query.scw
PDB file :
Tito_Scwrl_1R8D.pdb
: