Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYLTFKHVDFKTDDKLVLNDINFAIDEGDFVSIVGPSGSGKSTVLKLASGLMSPTAGHIFFDGKDLNQLEPIESRKMISYCFQT----PHLFGNTVEDNISFPYHIRHEK--VDYRRVDDLFQRFEMDQSYLKQDVKKLSGGEKQRIALIRQLLFEPKVLLLDEVTSALDNHNKAIVEKVIKSLHDK-GITILWITHDEEQSRRFANKVLKVVNGSIEAMEVIK
2AWO Chain:B ((2-212))
-ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE--RGVGMVFQSYALYPHL---SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL
General information:
TITO was launched using:
RESULT:
Template:
2AWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117941 for 1629 contacts (-72.4/contact) +
2D Compatibility (PS) -22538 + (NN) -10618 + (LL) 132
1D Compatibility (HY) -16800 + (ID) 3700
Total energy: -171465.0 ( -105.26 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_2AWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AWO-query.scw
PDB file :
Tito_Scwrl_2AWO.pdb
: