Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQSYSKNANHNMRRPVVKEEIVQYMRQHQKQNNGCLAELEA-FAKQENIP-IIPHETATYFRFLMQTLQPKHILEIGTAIGFSALLMAENA-PEAKITTIDRNEEMIVLAKENFAKYDNHNQITLLEGDAVDVLQT-----LDKSYDFVFMDSAKSKYIVFLPQVLKHLDVGGVVVLDDIFQGGDIAKPIDEVRRGQRTIYRGLQRLFDSTLRHPDLTATLVPLGDGLLMIRKNAEHIVLED
3CBG Chain:A ((17-232))
--------------ITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQ-----EAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK--------
General information:
TITO was launched using:
RESULT:
Template:
3CBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126643 for 1712 contacts (-74.0/contact) +
2D Compatibility (PS) -23014 + (NN) -15240 + (LL) 2108
1D Compatibility (HY) -11200 + (ID) 2600
Total energy: -176589.0 ( -103.15 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_3CBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CBG-query.scw
PDB file :
Tito_Scwrl_3CBG.pdb
: