Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELVIRDIRKRFQETEVLRGASYRFYSGKITGVLGRNGAGKTTLFNILYGDLAADNGTICLLKDNHEY-PLTDKDIGIVYSENYLPEFLTGYEFVKFYMDLHPSD--D-LMTIDDYLDFMEIGQTERHRIIKGYSDGMKSKLSLICLMISKPKVILLDEPLTAVDVVSSIAIKRLLLELS--EDHIIILSTHIMALAEDLCDIVAVLDKGKLQTLDIDRKHEQFEERLLQVLKGDEYDK
3RLF Chain:A ((3-220))
-SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM
General information:
TITO was launched using:
RESULT:
Template:
3RLF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164246 for 1659 contacts (-99.0/contact) +
2D Compatibility (PS) -22624 + (NN) -7937 + (LL) 328
1D Compatibility (HY) -9200 + (ID) 2200
Total energy: -205879.0 ( -124.10 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_3RLF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RLF-query.scw
PDB file :
Tito_Scwrl_3RLF.pdb
: