Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDIGIIVVSHSKNIAQGVVDLISEVA-KDVSITYVGGTEDGEIGTSFDQVQQIVEQ-NDKKTLLAFFDL--GSAKMNLELVADFSEKNIIIN---SVPVVEGAYTAAALLQAGADLDSIQSQLAELTINK
1PDO Chain:A ((2-118))
--TIAIVIGTHGW-AAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDK-EHYEVIAGVNIPMLVETLMAR---DDDPSFDELVALAVETGREG
General information:
TITO was launched using:
RESULT:
Template:
1PDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81149 for 822 contacts (-98.7/contact) +
2D Compatibility (PS) -12226 + (NN) -6031 + (LL) 700
1D Compatibility (HY) -4800 + (ID) 650
Total energy: -104156.0 ( -126.71 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_1PDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PDO-query.scw
PDB file :
Tito_Scwrl_1PDO.pdb
: