Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAVLILGGAGYIGSHMVDQLITQGKEKVIVVDNLVTGHRQAVHSDAI-------FYEGDLSDKTFMRQVFRENPDVDAVIHFAAFSLVAESMENPLKYFDNNTAGMIKLLEVMNECDIKNIVFSSTAATYG----IPEQVPILETAPQNPINPYGESKLMMETIMK--WADQAYGIKFVALRYFNVAGDKPDGSIGEDH-KPETHLLPIILQVAQGVRDKIMIFGDDYNTPDGTNVRDYVHPFDLADAHILAVDYLRQGNE----SNVFNLGSSTGFSNLQMLEAARRITGKEIPAQKAARRPGDPDTLIASSEKARQILGWEPKFDNIDKIISSAWAWHSSHPNGYED |
| 1Z45 Chain:A ((14-356)) | --VLVTGGAGYIGSHTVVELIENGYD-CVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY-KIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIF------RDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPY---------VLNLTAKPDRAKRELKWQTELQ-VEDSCKDLWKWTTENPFGYQL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Z45.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -159201 for 2727 contacts (-58.4/contact) +
2D Compatibility (PS) -33628 + (NN) -15373 + (LL) 220
1D Compatibility (HY) -26000 + (ID) 6400
Total energy: -240382.0 ( -88.15 by residue)
QMean score : 0.565
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