Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNYSGEVGLQYHLQIRPGDVGRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIDLDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFYGQHEPERMPVSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEAAIQVAVEALRTLIENDKSQ
3QPB Chain:D ((31-279))
-------VGLQYHLQIRPGDVGRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIELDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFYGQHEPERMPVSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEAAIQVAVEALRTLIEND---
General information:
TITO was launched using:
RESULT:
Template:
3QPB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124966 for 2297 contacts (-54.4/contact) +
2D Compatibility (PS) -27581 + (NN) -19033 + (LL) 400
1D Compatibility (HY) -33200 + (ID) 12400
Total energy: -216780.0 ( -94.38 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_3QPB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QPB-query.scw
PDB file :
Tito_Scwrl_3QPB.pdb
: