Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDRTMLDVLTDQL-VEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLDLSKIGDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK |
4XGC Chain:A ((38-388)) | --------------PCREREFENIYAFLEGKIQDQ------CMYVSGVPGTGKTATVTGVIRTLQEYLEINGMRLT-----EPRQAYVQIYKQLTGKTVSWEQAHALLEKRTTVLLVDELDILCNRRQDVVYNLLDWPTKLVVVTIANTMDLPERLGLTRLTF------QPYSHKQLQEIVTARLGKGEAVQLVARKVAAVSGDARRALDICRRATEIADTAAVKCVTMLHVQQALAEMI----ASAKVQAIRN----------CSRMEQIFLQAIAAEVTRTGVE---ETTFMGV-YQQVETIAAFMGV-----------TFPPPGRALRLCSKLGAERLIISEHSRNDLFQKILLNVSADDIHYALRV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XGC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -34176 for 2387 contacts (-14.3/contact) +
2D Compatibility (PS) -32676 + (NN) -4729 + (LL) 4468
1D Compatibility (HY) -9600 + (ID) 2350
Total energy: -79063.0 ( -33.12 by residue)
QMean score : 0.221
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