Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKSVICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLLKPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL
4JCV Chain:B ((23-215))
-KYPPSLVSLIRELSRLPGIGPASAQALAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRV--GQGMEVILATGTTVEGDATALYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQ--
General information:
TITO was launched using:
RESULT:
Template:
4JCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120563 for 1246 contacts (-96.8/contact) +
2D Compatibility (PS) -21406 + (NN) -17116 + (LL) 532
1D Compatibility (HY) -20000 + (ID) 4950
Total energy: -183503.0 ( -147.27 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_4JCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JCV-query.scw
PDB file :
Tito_Scwrl_4JCV.pdb
: