Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIKEIIVVEGRDDTARIKLAVDADTIETNGSAIDDHVIDQIRLAQK-TRGVIILTDPDFPGEKIRKTISEAVPGCKHAFLPKHLAKPKNKRGIGVEHASVESIRACLENVHEEMEAQPSDISAEDLIHAGLIGGPAAKCRRERLGDLLKIGYTNGKQLQKRLQMFQIKKSDFMSALDTVMREEQNE |
1GKU Chain:B ((611-675)) | ------------------------------------SRIEALRKLAHDAEFVIVGTDPDTEGEKIAWDLKNLLSGC----GAV--KR------AEFHEVTRRAILEALESLRD-------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GKU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -17266 for 370 contacts (-46.7/contact) +
2D Compatibility (PS) -7063 + (NN) -2163 + (LL) 8396
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -20946.0 ( -56.61 by residue)
QMean score : 0.412
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