Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLVIDVGNTNTVLGVYHDGKLEYHWRIETSRHKTEDEFGMILRSLFDHSGLMFEQIDGIIISSVVPPIMFALERMCTKYFHIEPQIVGPGMKTGLNIKYDNPKEVGADRIVNAVAAIHLYG-NPLIVVDFGTATTYCYIDENKQYMGGAIAPGITISTEALYSRAAKLPRIEITRPDNIIGKNTVSAMQSGILFGYVGQVEGIVKRMKWQAK--QEPKVIATGGLAPLIANESDCIDIVDPFLTLKGLELIYERNRVGSV
3DJC Chain:A ((3-257))
LILCIDVGNSHIYGGVFDGDEIKLRFRHT-SKVSTSDELGIFLKSVLRENNCSPETIRKIAICSVVPQVDYSLRSACVKYFSIDPFLLQAGVKTGLNIKYRNPVEVGADRIANAIAATHSFPNQNIIVIDFGTATTFCAISHKKAYLGGAILPGLRLSADALSKNTAKLPSVEIIKTESVVGRSTIESIQSGVYYGVLGACKELIQRIHHEAFNGDQILILATGGFASLFDKQGLY-DHLVPDLVLQGIRLAAMMNT----
General information:
TITO was launched using:
RESULT:
Template:
3DJC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -204970 for 2056 contacts (-99.7/contact) +
2D Compatibility (PS) -27010 + (NN) -13129 + (LL) 440
1D Compatibility (HY) -26000 + (ID) 5200
Total energy: -275869.0 ( -134.18 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_3DJC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DJC-query.scw
PDB file :
Tito_Scwrl_3DJC.pdb
: