Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKKITLACKTCGNRNYTTMKSSASAAERLEVKK--YCSTCNSH-------TAHLETK
2MDG Chain:A ((1-55))
MGSH---KCNVCSRTFFSENGLREHLQTHRGPAKHYMCPICGERFPSLLTLTEHKVTH
General information:
TITO was launched using:
RESULT:
Template:
2MDG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4925 for 194 contacts (25.4/contact) +
2D Compatibility (PS) -4766 + (NN) -358 + (LL) 432
1D Compatibility (HY) -1200 + (ID) 450
Total energy: -1417.0 ( -7.30 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_2MDG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2MDG-query.scw
PDB file :
Tito_Scwrl_2MDG.pdb
: