Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNHFYVWHIKRVKQLIIILIAAFAAASFFYIQRAVPLPVFSTDTGPKAIYKGETDSKDISLTFDISWGDERAEPILNTLKANGIKNATF-FLSASWAER-HPDTVARIVKDGHQIGSMGYAY--KNYANLESSEIKKDMNRAQTAFEKLGVKDIQLLRPP--TGQFNKNVLKVAKQYNYTVVHYSVNSQDWTNPGVEKIIDNVTK---QVSGGDIILLHASDSAKQTEEALPDIIHQLKEKGLKNVTVGDLIANSDAKSAEVK |
| 2VYO Chain:A ((21-220)) | ---------------------------------------------------VCTNSGMIAINFVDGPVRGVTDRILNTLDELGV-KATFSFTVNQKAVGNVGQLYRRAVEEGHNVALRVDPSMDEGYQCLSQDALENNVDREIDTIDGLSGTEIRYAAVPICNGQVNSEMYNILTERGVLPVGYTFCPYDYDDP-VGE-FESMIEGSDPKHHSFIILMHDGQE--ADTSRLENMVKIGKDKGYRFVNMDECLQGYK------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VYO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -62612 for 1499 contacts (-41.8/contact) +
2D Compatibility (PS) -20758 + (NN) -8848 + (LL) 6104
1D Compatibility (HY) -12000 + (ID) 2100
Total energy: -100214.0 ( -66.85 by residue)
QMean score : 0.490
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