Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEMMIKKRIKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDIN-RKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTEGLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRDL
4NQW Chain:A ((27-202))
---DLDALLRRVA-HDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCE----------------------------------AGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLD--
General information:
TITO was launched using:
RESULT:
Template:
4NQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74662 for 996 contacts (-75.0/contact) +
2D Compatibility (PS) -15707 + (NN) -5502 + (LL) 2908
1D Compatibility (HY) -9600 + (ID) 1950
Total energy: -104513.0 ( -104.93 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_4NQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NQW-query.scw
PDB file :
Tito_Scwrl_4NQW.pdb
: