Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDSINNGHKESHDHRISNDAEMITDEKWQAIINNDAAYNNQFFYAVKSTGIFCKPSCKSRVPKKENVCIFPNTEQALRANFRPCKRCKPTNEKMPDSEWVDLITEYIDKNFTEKLTLESLADICHGSPYHMHRTFKKIKGITLVEYIQQVRVHAAKKYLIQTNKAIGDIAICVGIANAPYFITLFKKKTGQTPARFRQMSKMEETYNGNK
3W6V Chain:A ((37-142))
-------------------------------------------------------------------------------------------------SDPLAEVVAWALEHLHEQFDVETLAARAYMSRRTFDRRFRSLTGSAPLQWLITQRVLQAQRLLETSDYSVDEVAGRCGFRSPVALRGHFRRQLGSSPAAYRAAYRA--------
General information:
TITO was launched using:
RESULT:
Template:
3W6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67131 for 751 contacts (-89.4/contact) +
2D Compatibility (PS) -11134 + (NN) -2200 + (LL) 4812
1D Compatibility (HY) -2400 + (ID) 1000
Total energy: -79053.0 ( -105.26 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_3W6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W6V-query.scw
PDB file :
Tito_Scwrl_3W6V.pdb
: