Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METNKPTLYWSLLMFKDWNFYIASTLKGLVFVGSQNKPIEELFEWARKRFPGSLLVEDDDKLEPYAVEITQYLEGKRKNFTVPVEYAGTQFQLAVWNALCEIPYGQTKSYSDIANDINKPAAVRAVGAAIGANPVLITVPCHRVIGKNGSLTGYRGGFEMKTLLLDLEKRASSEMDVPH
4BHB Chain:A ((1-160))
------MVHYRTIDSPIGPLTLAGHGSVLTNLRMLEQTYEPSRT----H-----WTPDPGAFSGAVDQLNAYFAGELTEFDVELDLRGTDFQQRVWKALLTIPYGETRSYGEIADQIGAPGAARAVGLANGHNPIAIIVPCHRVIGASGKLTGYGGGINRKRALLELEKSRAPAD----
General information:
TITO was launched using:
RESULT:
Template:
4BHB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110745 for 1175 contacts (-94.3/contact) +
2D Compatibility (PS) -17013 + (NN) -6821 + (LL) 660
1D Compatibility (HY) -7600 + (ID) 2900
Total energy: -144419.0 ( -122.91 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_4BHB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BHB-query.scw
PDB file :
Tito_Scwrl_4BHB.pdb
: